PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875645.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C3H
Protein Properties Length: 437aa    MW: 47942.1 Da    PI: 8.5071
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875645.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-114975127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_015875645.1 49 PGEPDCSYYIRTGLCRFGATCRFNHPP 75
                    5789*********************97 PP

2zf-CCCH39.87.7e-1395120227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  XP_015875645.1  95 GQPECQYYLKTGTCKFGATCKFHHPR 120
                     5799********************96 PP

3zf-CCCH36.67.7e-12142166327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C +++rtG+Ck+G++CkF+H++
  XP_015875645.1 142 ETECAYYLRTGQCKFGSTCKFHHPQ 166
                     578********************97 PP

4zf-CCCH37.93e-12299325127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_015875645.1 299 PGQPECQFYMKTGDCKFGAVCRFHHPR 325
                     5789*********************96 PP

5zf-CCCH38.61.8e-12345371127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_015875645.1 345 PGEPLCIFYYRYGICKFGPSCKFDHPM 371
                     589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874876IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-55376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-45474IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-593120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.64793121IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-696122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-599120IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596298326IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9300325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6302328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5304326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211344372IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6344371IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10346371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6347371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEFDAGIPMS LAAVTEAPSL SPSLSQDAMW QMNLRSSETM DSGPYPERPG EPDCSYYIRT  60
GLCRFGATCR FNHPPNRKLA IATARMKGEF PERMGQPECQ YYLKTGTCKF GATCKFHHPR  120
DKAGIAGRVS LNTSGYPLRP NETECAYYLR TGQCKFGSTC KFHHPQPNNM MVSMRGSPVY  180
TTVPSPTAPG QQSYPGGITN WSRASFIPSP RWQGPSSYPP LILPQGVVSV PGWNAYSGQL  240
GSVSSSENQQ IAGNSPIYGT PRQSEQNAAS QGTFSQYRSS SVPVGFYALQ RENVFPERPG  300
QPECQFYMKT GDCKFGAVCR FHHPRERLIP VPDCVLSPIG LPLRPGEPLC IFYYRYGICK  360
FGPSCKFDHP MGIFTYNLST TSSTDTPVRR LLGSSSGTAA LNLSSEGLVE AGSKPRRLSL  420
SEPRQMSSGD ENTETEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875645.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLB9RFV80.0B9RFV8_RICCO; Nucleic acid binding protein, putative
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1